Index _ | A | B | C | D | E | G | H | I | L | M | N | P | R | S | T | U | V | W | Z _ __call__() (snps.utils.Parallelizer method) __init__() (snps.ensembl.EnsemblRestClient method) (snps.io.generator.SyntheticSNPGenerator method) (snps.io.Reader method) (snps.io.reader.Reader method) (snps.io.SyntheticSNPGenerator method) (snps.io.Writer method) (snps.io.writer.Writer method) (snps.resources.ReferenceSequence method) (snps.resources.Resources method) (snps.snps.SNPs method) (snps.utils.Parallelizer method) A assembly (snps.resources.ReferenceSequence property) (snps.snps.SNPs property) assert_frame_equal_with_string_index() (in module snps.testing) (snps.testing.SNPsTestMixin method) assert_series_equal_with_string_dtype() (in module snps.testing) (snps.testing.SNPsTestMixin method) B build (snps.resources.ReferenceSequence property) (snps.snps.SNPs property) build_detected (snps.snps.SNPs property) build_original (snps.snps.SNPs property) C chip (snps.snps.SNPs property) chip_version (snps.snps.SNPs property) chrom (snps.resources.ReferenceSequence property) chromosomes (snps.snps.SNPs property) chromosomes_summary (snps.snps.SNPs property) clean_str() (in module snps.utils) clear() (snps.resources.ReferenceSequence method) cluster (snps.snps.SNPs property) complement_genotype() (in module snps.testing) (snps.testing.SNPsTestMixin method) complement_one_allele() (in module snps.testing) (snps.testing.SNPsTestMixin method) compute_cluster_overlap() (snps.snps.SNPs method) count (snps.snps.SNPs property) create_dir() (in module snps.utils) create_example_dataset_pair() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) create_example_datasets() (snps.resources.Resources method) create_simulated_snp_df() (in module snps.testing) create_snp_df() (in module snps.testing) (snps.testing.SNPsTestMixin static method) D detect_build() (snps.snps.SNPs method) determine_sex() (snps.snps.SNPs method) discrepant_merge_genotypes (snps.snps.SNPs property) discrepant_merge_positions (snps.snps.SNPs property) discrepant_merge_positions_genotypes (snps.snps.SNPs property) discrepant_vcf_position (snps.snps.SNPs property) discrepant_XY (snps.snps.SNPs property) downloads_enabled (snps.testing.SNPsTestMixin property) duplicate (snps.snps.SNPs property) E end (snps.resources.ReferenceSequence property) EnsemblRestClient (class in snps.ensembl) G generate_snps() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) generic_snps() (snps.testing.SNPsTestMixin method) get_all_reference_sequences() (snps.resources.Resources method) get_all_resources() (snps.resources.Resources method) get_assembly_mapping_data() (snps.resources.Resources method) get_chip_clusters() (snps.resources.Resources method) get_complement() (in module snps.testing) (snps.testing.SNPsTestMixin static method) get_count() (snps.snps.SNPs method) get_dbsnp_151_37_reverse() (snps.resources.Resources method) get_empty_snps_dataframe() (in module snps.io) (in module snps.io.reader) get_gsa_chrpos() (snps.resources.Resources method) get_gsa_resources() (snps.resources.Resources method) get_gsa_rsid() (snps.resources.Resources method) get_low_quality_snps() (snps.resources.Resources method) get_par_regions() (snps.snps.SNPs static method) get_reference_sequences() (snps.resources.Resources method) get_utc_now() (in module snps.utils) gzip_file() (in module snps.utils) H heterozygous() (snps.snps.SNPs method) heterozygous_MT (snps.snps.SNPs property) homozygous() (snps.snps.SNPs method) I ID (snps.resources.ReferenceSequence property) identify_low_quality_snps() (snps.snps.SNPs method) is_gzip() (snps.io.Reader static method) (snps.io.reader.Reader static method) is_zip() (snps.io.Reader static method) (snps.io.reader.Reader static method) L length (snps.resources.ReferenceSequence property) low_quality (snps.snps.SNPs property) M md5 (snps.resources.ReferenceSequence property) merge() (snps.snps.SNPs method) module snps.ensembl snps.io snps.io.generator snps.io.reader snps.io.writer snps.resources snps.snps snps.testing snps.utils N notnull() (snps.snps.SNPs method) P Parallelizer (class in snps.utils) path (snps.resources.ReferenceSequence property) perform_rest_action() (snps.ensembl.EnsemblRestClient method) phased (snps.snps.SNPs property) predict_ancestry() (snps.snps.SNPs method) R read() (snps.io.Reader method) (snps.io.reader.Reader method) read_23andme() (snps.io.Reader method) (snps.io.reader.Reader method) read_23Mofang() (snps.io.Reader method) (snps.io.reader.Reader method) read_ancestry() (snps.io.Reader method) (snps.io.reader.Reader method) read_circledna() (snps.io.Reader method) (snps.io.reader.Reader method) read_dnaland() (snps.io.Reader method) (snps.io.reader.Reader method) read_file() (snps.io.Reader class method) read_ftdna() (snps.io.Reader method) (snps.io.reader.Reader method) read_ftdna_famfinder() (snps.io.Reader method) (snps.io.reader.Reader method) read_generic() (snps.io.Reader method) (snps.io.reader.Reader method) read_genes_for_good() (snps.io.Reader method) (snps.io.reader.Reader method) read_gsa() (snps.io.Reader method) (snps.io.reader.Reader method) read_helper() (snps.io.Reader method) (snps.io.reader.Reader method) read_livingdna() (snps.io.Reader method) (snps.io.reader.Reader method) read_mapmygenome() (snps.io.Reader method) (snps.io.reader.Reader method) read_myheritage() (snps.io.Reader method) (snps.io.reader.Reader method) read_plink() (snps.io.Reader method) (snps.io.reader.Reader method) read_sano_dtc() (snps.io.Reader method) (snps.io.reader.Reader method) read_selfdecode() (snps.io.Reader method) (snps.io.reader.Reader method) read_snps_csv() (snps.io.Reader method) (snps.io.reader.Reader method) read_tellmegen() (snps.io.Reader method) (snps.io.reader.Reader method) read_vcf() (snps.io.Reader method) (snps.io.reader.Reader method) Reader (class in snps.io) (class in snps.io.reader) ReferenceSequence (class in snps.resources) remap() (snps.snps.SNPs method) Resources (class in snps.resources) S save_as_23andme() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) save_as_ancestry() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) save_as_ftdna() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) save_as_generic() (snps.io.generator.SyntheticSNPGenerator method) (snps.io.SyntheticSNPGenerator method) save_df_as_csv() (in module snps.utils) sequence (snps.resources.ReferenceSequence property) sex (snps.snps.SNPs property) Singleton (class in snps.utils) SNPs (class in snps.snps) snps (snps.snps.SNPs property) snps.ensembl module snps.io module snps.io.generator module snps.io.reader module snps.io.writer module snps.resources module snps.snps module snps.testing module snps.utils module snps_qc (snps.snps.SNPs property) SNPsTestMixin (class in snps.testing) sort() (snps.snps.SNPs method) source (snps.snps.SNPs property) species (snps.resources.ReferenceSequence property) start (snps.resources.ReferenceSequence property) summary (snps.snps.SNPs property) SyntheticSNPGenerator (class in snps.io) (class in snps.io.generator) T taxonomy (snps.resources.ReferenceSequence property) to_csv() (snps.snps.SNPs method) to_tsv() (snps.snps.SNPs method) to_vcf() (snps.snps.SNPs method) U unannotated_vcf (snps.snps.SNPs property) url (snps.resources.ReferenceSequence property) V valid (snps.snps.SNPs property) W write() (snps.io.Writer method) (snps.io.writer.Writer method) write_file() (snps.io.Writer class method) Writer (class in snps.io) (class in snps.io.writer) Z zip_file() (in module snps.utils)