Output Files¶
The various output files produced by snps are detailed below. Output files are saved in the
output directory, which is defined at the instantiation of a SNPs object.
Save SNPs¶
SNPs can be saved with SNPs.save. By default, one tab-separated
.txt or .vcf file (vcf=True) is output when SNPs are saved. If comma is specified as
the separator (sep=","), the default extension is .csv.
The content of non-VCF files (after comment lines, which start with #) is as follows:
| Column | Description |
|---|---|
| rsid | SNP ID |
| chromosome | Chromosome of SNP |
| position | Position of SNP |
| genotype | Genotype of SNP |
When filename is not specified, default filenames are used as described below.